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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
BRCA cis rs17030613 1 rs12030612 chr1:113215637 ST7L chr1:113066142-113162405:- 0.56 11.74 5.15E-30 Diastolic blood pressure;Blood pressure
BRCA cis rs17030613 1 rs12030641 chr1:113215717 ST7L chr1:113066142-113162405:- 0.56 11.74 5.15E-30 Diastolic blood pressure;Blood pressure
BRCA cis rs9362426 1 rs1203156 chr6:88079694 C6orf163 chr6:88057220-88075180:+ 0.19 4.77 2.1E-6 Depressive episodes in bipolar disorder
BRCA cis rs6537837 1 rs12033376 chr1:110130641 AMIGO1 chr1:110049447-110052336:- 0.18 4.83 1.55E-6 Major depressive disorder
BRCA cis rs6684514 1 rs12038203 chr1:156248265 BGLAP chr1:156182784-156213112:+ 0.2 5.36 1.02E-7 Mean corpuscular hemoglobin concentration;Glycated hemoglobin levels
BRCA cis rs6684514 1 rs12038217 chr1:156248297 BGLAP chr1:156182784-156213112:+ 0.2 5.36 1.02E-7 Mean corpuscular hemoglobin concentration;Glycated hemoglobin levels
BRCA cis rs6684514 1 rs12038481 chr1:156284815 BGLAP chr1:156182784-156213112:+ 0.19 5.17 2.73E-7 Mean corpuscular hemoglobin concentration;Glycated hemoglobin levels
BRCA cis rs12038826 1 rs12038826 chr1:230922951 C1orf124 chr1:231473682-231489988:+ 0.16 3.46 0.00056 Myopia (pathological)
BRCA cis rs6684514 1 rs12040868 chr1:156284803 BGLAP chr1:156182784-156213112:+ 0.2 5.27 1.63E-7 Mean corpuscular hemoglobin concentration;Glycated hemoglobin levels
BRCA cis rs17030613 1 rs12040988 chr1:113173804 ST7L chr1:113066142-113162405:- 0.55 11.63 1.57E-29 Diastolic blood pressure;Blood pressure
BRCA cis rs6684514 1 rs12041164 chr1:156279811 BGLAP chr1:156182784-156213112:+ 0.2 5.48 5.4E-8 Mean corpuscular hemoglobin concentration;Glycated hemoglobin levels
BRCA cis rs6684514 1 rs12045339 chr1:156294211 BGLAP chr1:156182784-156213112:+ 0.2 5.26 1.75E-7 Mean corpuscular hemoglobin concentration;Glycated hemoglobin levels
BRCA cis rs4908760 1 rs12046643 chr1:8547866 RERE chr1:8412466-8877699:- 0.1 3.41 0.000678 Vitiligo
BRCA cis rs2275426 1 rs12049588 chr1:46472422 CCDC163P chr1:45960581-45965646:- -0.39 -11.7 7.61E-30 Body mass index
BRCA cis rs2275426 1 rs12049588 chr1:46472422 CCDC17 chr1:46085717-46089729:- 0.11 3.53 0.000435 Body mass index